PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G280900.1
Common NameB456_007G280900, LOC105801607
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 227aa    MW: 25837 Da    PI: 5.429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G280900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1994143355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  Gorai.007G280900.1  94 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALAMRG 143
                         9*******.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0993151IPR001471AP2/ERF domain
SMARTSM003801.1E-3693157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3193152IPR001471AP2/ERF domain
PfamPF008477.5E-1494143IPR001471AP2/ERF domain
CDDcd000183.73E-2994151No hitNo description
PRINTSPR003676.3E-1194105IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2294152IPR016177DNA-binding domain
PRINTSPR003676.3E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGSFFQYPNL HFSSESSSSH ISQENFSPRS SFRYAQNQAL PFNENDSQEM LLLGVLNQAP  60
EAHSFDTTSV TSFRDDHEVN SEPVEEKTAK EISYRGVRKR PWGKYAAEIR DSTRNGVRVW  120
LGTFDTAESA ALAYDQAALA MRGPMAILNF PMDKVYESLQ EMNYGFEEGC SPVLTMKKKY  180
SMKTRRSGKK KMMKKDEKEN RLVLEDLGAD YLEELLCLSE TATPYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2789152164ATERF1
3gcc_A8e-2789152164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184190RRSGKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488287.11e-171PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC84e-62ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2SSD71e-171A0A0D2SSD7_G
STRINGPOPTR_0013s04240.11e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-51ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]